The first step is to import some vector fields into a 'PIVMAT structure array'. (Select also the directory readimx if necessary). In the 'Home' tab, select ' Set Path', click on ' Add Folder' ( NOT 'Add with Subfolders')Īnd select the directory pivmat. ReadIMX package available from the LaVision web siteģ. If you wish to import DaVis files, download also the Upgrade from an older version, first delete the previous pivmat directory.Ģ. Do NOT install in the Matlab applicationįolder (typically /Program Files/Matlab/.). Subdirectories html, sample and private areĬorrectly unzipped as well). Download the PIVMat Toolbox and extract the ZIP file in aįolder, for example /Documents/MATLAB/toolbox/pivmat (make sure the Some functions require the Image Processing Toolbox.ġ. PIV plugin (Qingzong Tseng, 2015) for ImageJ (NIH) / Fiji The PIVMat Toolbox works with MATLAB 7 (R2006a) or higher, on every operating system (successfully tested up to Matlab R2017b, under Windows 7, 8 and 10).ĭaVis (LaVision) - needs additional package (see below) Works on all platforms: Windows/Unix/Mac. Support for FS-SS (Free-Surface Synthetic Schlieren) applications for surface wave reconstructions (including production of random dot patterns)įull support of DaVis files (VC7, IM7, IMX, EXP, SET) and file attributes (Acquisition times, PIV parameters.) High-quality vector and scalar output based on Matlab visualization tools: 2D and 3D fields (meshes, surfaces.), movies (AVI), contour plots.Īdvanced statistics: Histograms, correlation functions, vector and scalar structure functions, power spectra, integral scales, joint probability density functions. More than 60 functions with full on-line documentation sample fields included. Standard vector field operations: interpolation, filtering (median, Butterworth.), averaging (temporal, spatial, azimuthal.), derivatives (vorticity, divergence, strain, Q-factor.)įully vectorized: all operations directly apply on arrays of fields (no for loops) Import vector fields from PIV (Particle Image Velocimetry) or other related technics, such as stereo-PIV, DIC (Digital Image Correlation), SS and BOS (Synthetic Schlieren and Background-oriented Schlieren).Ĭompatibale with files from DaVis (LaVision) This toolbox is covered by the BSD License.Ĭopyright (c) 2021, Frédéric Moisy. Itself does not perform any PIV computations. Statistics, spectra etc), and to produce high-quality figures. The PIVMat Toolbox enables to handle and performĬomplex operations over large amount of velocity fields (filtering, SS (synthetic schlieren) or BOS (background-oriented schlieren) applications.Ĭompatible with the most popular PIV softwares: PIV (particle image velocimetry), stereo-PIV, DIC (digital image correlation) The PIVMat Toolbox for Matlab contains a set of command-lineįunctions to import, post-process and analyse 2- and 3-components vector fields from I would also like to bring modern vision analysis tools to the biological research community especially the machine learning and deep learning methods.Īpart from research, during my 7+ years in the private sector, I have also built strong expertise in medical device regulatory standards and quality systems (ISO13485, FDA QSR, PIC/S GMP etc.), as well as product development in IVD and biomaterial implants.Pivmat - A PIV post-processing and data analysis toolbox for Matlab I am also proficient in statistical programming, machine learning and data visualization using R and Python.Īt CENTURI, I look forward to participating and helping people in imaging and data analysis related projects. I am enthusiastic about prototyping and developing image processing algorithm for microscopy data (ImageJ/FIJI). Afterward, I have been working on data mining, implementing machine learning pipeline and microfluidic imaging cytometer instrumentation in both academia and biotech industry. I have a PhD in biophysics focusing on analysis of cellular images, automatic microscopy and characterizing cell-cell / cell-ECM interaction within multicellular architecture.
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |